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Journal Papers
- Dequan
Li, Wen Gao, Charles X. Ling, Xiaobiao Wang, Ruixiang Sun, and Simin
He. IndexToolkit: An Open Source Toolbox to Index Protein Data-bases
for High-throughput Proteomics. Bioinformatics,
22(20), pp2572-2573, 2006.
- Dequan Li , Yan Fu , Ruixiang
Sun, Charles X. Ling, Yonggang Wei, Hu Zhou, Rong Zeng, Qiang Yang,
Simin He and Wen Gao. pFind: a novel database-searching software
system for automated peptide and protein identification via tandem
mass spectrometry. Bioinformatics , 21(13), pp3049-3050, 2005.
- Yan
Fu , Qiang Yang, Ruixiang Sun, Dequan Li, Rong Zeng, Charles X.
Ling, Wen Gao. Exploiting the kernel trick to correlate fragment ions
for peptide identification via tandem mass spectrometry. Bioinformatics .
Vol.20, pp1948-1954, 2004.
- Yiqiang Chen, Wen Gao, Yan Fu , Dequan
Li, Xiang Chen. Research on Protein
Recognition base on Information Technology. Chinese Bulletin of
Life Sciences , Vol.15, No.2, pp70-78, 2003.
- 李德泉，付岩，孙瑞祥，贺思敏，高文. 肽鉴定结果评估模型的特征选择研究. 计算机研究与发展，Vol. 42,增刊B, pp178-183, 2005年09月 (Chinese )
- 孙瑞祥，付岩，李德泉，张京芬，王晓彪，盛泉虎，曾嵘，陈益强，贺思敏，高文. 基于质谱技术的计算蛋白质组学研究, 中国科学E辑:信息科学,
36(2):222-224,2006.(Chinese )
Conference
- Dequan Li , Yan Fu, Ruixiang
Sun, Simin He, and Wen Gao.Feature Selection for Significance
Evaluation of Peptide Identification. In Proceedings of CSCA 2005, Beijing, China, Sep.23-25, 2005
- Dequan Li , Ruixiang Sun,
Yonggang Wei, Hu Zhou, Rong Zeng, Simin He, Wen Gao. pFind: A Novel
Web-based Application for Automated Identification of Peptide and
Protein by MS/MS Data . In Proceedings of HUPO 3rd Annual World
Congress, Beijing,
China,
Oct.25-27,2004
- Yan
Fu, Qiang Yang, Charles X. Ling, Haipeng Wang, Dequan Li,
Ruixiang Sun, Hu Zhou, Rong Zeng, Yiqiang Chen, Simin He, Wen Gao. A
Kernel-based Case Retrieval Algorithm with Application to
Bioinformatics. In Proceedings of the 8th Pacific Rim International
Conference on Artificial Intelligence (PRICAI 2004), Auckland, New
Zealand, August 9-13, 2004, LNAI 3157, pp. 544–553.
Software
- The
main developer of pFind, our
database-searching software tool.
- IndexToolkit, an open
source toolbox to index protein databases for high-throughtput
proteomics.
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Email: dqli@jdl.ac.cn or dequanli@gmail.com
Tel:
+86 10 6260 0567
Mailing
address:
Digital Technology Laboratory
Institute of Computing Technology,
P.O.Box
2704#,Beijing,China
100080
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Chinese Version
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English Version
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